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Mouse_STMICH1

Mus musculus (Mouse) - Taxonomy ID: 10090
Tissue
Brain
Biological Process
Disease (ICH)
Time Points
6
Time Details
naive_control, 3_hours_post_ICH, 6_hours_post_ICH, 12_hours_post_ICH, 1_day_post_ICH, 3_days_post_ICH
Total Slices
21
Sequencing Technology
Stereo-seq
Slice Thickness
10 μm
Interslice Distance
10 μm
Analysis Bin Size
single-cell segmentation (6 μm); no binning reported
Publication
Spatiotemporal transcriptomic maps of mouse intracerebral hemorrhage at single-cell resolution
Journal
Neuron (2025)
Data Source
https://db.cngb.org/stomics/stmich/
Description

Intracerebral hemorrhage (ICH) is a prevalent disease with high mortality. Despite advances in clinical care, the prognosis of ICH remains poor due to an incomplete understanding of the complex pathological processes. To address this challenge, we generated single-cell-resolution spatiotemporal transcriptomic maps of the mouse brain following ICH. This dataset is the most extensive resource available, providing detailed information about the temporal expression of genes along with a high-resolution cellular profile and preserved cellular organization. We identified 100 distinct cell subclasses, 17 of which were found to play significant roles in the pathophysiology of ICH. We also report similarities and differences between two experimental ICH models and human postmortem ICH brain tissue. This study advances the understanding of the local and global responses of brain cells to ICH. It provides a valuable resource that can facilitate future research and aid the development of novel therapies for this devastating condition.